PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036637
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 178aa    MW: 19475.8 Da    PI: 6.2744
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036637genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.17.2e-5530123295
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                  +eqdrflPianvsrimkk lPanakisk+ake+vqecvsefisfvt+easdkcqrekrktingddllwa++tlGf++yv plk+yl kyr++e+
  Lus10036637  30 KEQDRFLPIANVSRIMKKSLPANAKISKEAKESVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFDNYVGPLKAYLGKYRDTEE 123
                  89*****************************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-5028125IPR009072Histone-fold
SuperFamilySSF471132.33E-3832126IPR009072Histone-fold
PfamPF008083.3E-273599IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.4E-196381No hitNo description
PROSITE patternPS0068506682IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.4E-1982100No hitNo description
PRINTSPR006154.4E-19101119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAGKRNQQKG IIPTGSPTSS DGGSSFNNNK EQDRFLPIAN VSRIMKKSLP ANAKISKEAK  60
ESVQECVSEF ISFVTGEASD KCQREKRKTI NGDDLLWAMT TLGFDNYVGP LKAYLGKYRD  120
TEEGDTDDDV VEAVFDSTIN NTTFIGGADH HHFYGEVGGP RPASLIISIR ITEVLRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4730120292Transcription factor HapC (Eurofung)
4g92_B3e-4730120292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304851.16e-65PREDICTED: nuclear transcription factor Y subunit B-3-like
RefseqXP_012075209.14e-65PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotO233106e-58NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A067KTU34e-65A0A067KTU3_JATCU; Uncharacterized protein
STRINGGLYMA08G14931.16e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-57nuclear factor Y, subunit B3